Ultra-high throughput diagnostic testing of highly pathogenic avian influenza H5N1 to improve pandemic preparedness
Charles C.Y. Xu, Frank Zhang, Vincent Streva, Jamie Lemon, Scott Duong, Ute Dreses-Werringloer, Ansamma Joseph, Courtney Murnane, Stephen E. Harris, Erika T. Ebbs, Tylis Chang, and Stefan Jurestschko. In prep. Pre-exposure protects against severe environmental stress in complex natural communities Charles C.Y. Xu, Vincent Fugère, Naíla Barbosa da Costa, Beatrix Beisner, Graham Bell, Melania E. Cristescu, Gregor F. Fussmann, Andrew Gonzalez, Jesse B. Shapiro, Rowan D.H. Barrett. In prep. Noise pollution does not significantly affect distributions of red-wattled lapwing Vanellus indicus and pied king-fisher Ceryle rudis in a riverine ecosystem Parisa Nasirpour, Seyed Mehdi Amininasab, Seyed Masoud Hosseini-Moosavi, Charles C.Y. Xu. Ornithology Research. In review. Community assembly of the human piercing microbiome [LINK] Charles C.Y. Xu, Juliette Lemoine, Avery Albert, Élise Mac Whirter, Rowan D.H. Barrett. Proceedings of the Royal Society B: Biological Sciences. 290:20231174. 2023. DOI: 10.1098/rspb.2023.1174 Habitat quality assessment based on local expert knowledge and landscape patterns for bird of prey species in Hamadan, Iran [LINK] Sedighe Abdollahi, Elahe Zeilabi, Charles C.Y. Xu. Modeling Earth Systems and Environment. 1-11. 2023. DOI: 10.1007/s40808-023-01896-y A new multiplex qPCR assay to detect and differentiate big cat species in the illegal wildlife trade [LINK] Carol S. Henger, Dyan Straughan, Charles C.Y. Xu, Batya Nightingale, Heidi E. Kretser, Mary K. Burnham-Curtis, Denise McAloose, Tracie A. Seimon. Scientific Reports. 13:9796. 2023. DOI: 10.1038/s41598-023-36776-z Ensemble modelling the distribution and habitat suitability of wild goat Capra aegagrus in southwestern Iran [LINK] Seyed M. Amininasab, Navid Zamani, Hamid Taleshi, Charles C.Y. Xu. Biodiversity. 24(3):124-136. 2023. DOI: 10.1080/14888386.2023.2221672 Estimating biodiversity across the tree of life with environmental DNA from Mount Everest’s southern flank [LINK] Marisa C.W. Lim, Anton Seimon, Batya Nightingale, Charles C.Y. Xu, Stephan R.P. Halloy, Adam J. Solon, Nicholas B. Dragone, Steven K. Schmidt, Alex Tait, Sandra Elvin, Aurora C. Elmore, Tracie A. Seimon. iScience. 104848. 2022. DOI: 10.1016/j.isci.2022.104848 Influence of breeding time, nest size, water depth, and egg size on the breeding success of the little bittern Ixobrychus minutus [LINK] Seyed M. Amininasab, Seyed M. Hosseini-Moosavi, Charles C.Y. Xu. Avian Biology Research. 15(3):144-148. 2022. DOI: 10.1177/17581559221111687 Measuring protected-area effectiveness using vertebrate distributions from leech iDNA [LINK] Yinqiu Ji, Christopher C.M. Baker, Viorel D. Popescu, Jiaxin Wang, Zhenyang Wang, Yuanheng Li, Lin Wang, Chaolang Hua, Zhongxing Yang, Chunyan Yang, Charles C.Y. Xu, Alex Diana, Qingzhong Wen, Naomi E. Pierce, and Douglas W. Yu. Nature Communications. 13:1555. 2022. DOI: 10.1038/s41467-022-28778-8 The effect of egg laying onset, nest size and egg size on the hatching success of the Little Grebe Tachybaptus ruficollis [LINK] Seyed M. Amininasab, Seyed M. Hosseini-Moosavi, Mahdi Mardani, Charles C.Y. Xu. Avocetta. 45(2):169-176. 2021. DOI: 10.30456/AVO.2021203 Promoting equity and inclusion with student-driven initiatives: lessons learned from STEMM Diversity [LINK] Jessica Ford, Nathalie Jreindini, Kirsten E. Crandall, Sarah Sanderson, Charles C.Y. Xu. Trends in Ecology and Evolution. 36(12):1063-1066. 2021. DOI: 10.1016/j.tree.2021.08.013 Influence of breeding time, nest size, and egg size on the breeding success of the Common Moorhen Gallinula chloropus [LINK] Seyed M. Amininasab, Seyed M. Hosseini-Moosavi, Charles C.Y. Xu. Acta Oecologica. 113: 103779. 2021. DOI: 10.1016/j.actao.2021.103779 Transgenes from genetically modified animals detected via non-invasive and environmental DNA [LINK] Charles C.Y. Xu, Claire Ramsay, Mitra Cowan, Paul Lasko, Rowan D.H. Barrett. PLOS ONE. 16(8): e0249439. 2021. DOI: 10.1371/journal.pone.0249439 Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment [LINK] Naíla Barbosa da Costa, Vincent Fugère, Marie-Pier Hébert, Charles C.Y. Xu, Rowan D.H. Barrett, Beatrix E. Beisner, Graham Bell, Viviane Yargeau, Gregor F. Fussmann, Andrew Gonzalez, and Jesse B. Shapiro. Molecular Ecology. 30(19):4771-4788. 2021. DOI: 10.1111/mec.16100 Identifying diagnostic genetic markers for a cryptic invasive agricultural pest: a test case using the apple maggot fly, Rhagoletis pomonella (Diptera: Tephritidae) [LINK] Meredith M. Doellman, Glen R. Hood, Jacob Gersfeld, Amanda Driscoe, Charles C.Y. Xu, Ryan N. Sheehy, Noah Holmes, Wee Yee, and Jeffrey L. Feder. Annals of the Entomological Society of America. 113(4):246-256. 2020. DOI: 10.1093/aesa/saz069 Community rescue in experimental freshwater ecosystems facing severe pesticide pollution [LINK] Vincent Fugère, Marie-Pierre Hébert, Naíla Barbosa da Costa, Charles C.Y. Xu, Rowan D.H. Barrett, Beatrix E. Beisner, Graham Bell, Gregor F. Fussmann, Jesse B. Shapiro, Viviane Yargeau, and Andrew Gonzalez. Nature Ecology and Evolution. 4: 578-588. 2020. DOI: 10.1038/s41559-020-1134-5 Effect of grasshopper availability on the breeding success of Grey Hypocolius Hypocolius ampelinus, a migratory bird [LINK] Seyed Masoud Hosseini-Moosavi, Seyed Mehdi Amininasab, Charles C.Y. Xu, Mahmoud-Reza Hemami, and Reza Karimpour. Bird Study. 66(2): 279-282. 2019. DOI: 10.1080/00063657.2019.1637817 Collapse of niche structure on islands with introduced top predators [LINK] Robert M. Pringle, Tyler R. Kartzinel, Todd M. Palmer, Timothy J. Thurman, Kena Fox-Dobbs, Charles C.Y. Xu, Matthew C. Hutchinson, Tyler C. Coverdale, Joshua H. Daskin, Dominic A. Evangelista, Kiyoko M. Gotanda, Naomi A. Man in't Veld, Johanna E. Wegener, Jason J. Kolbe, Thomas W. Schoener, David A. Spiller, Jonathan B. Losos, and Rowan D.H. Barrett. Nature. 2019. 570: 58-64. 2019. DOI: 10.1038/s41586-019-1264-6 An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies [LINK] Jan Axtner, Alex Crampton-Platt, Lisa A. Hörig, Azlan Mohamed, Charles C.Y. Xu, Douglas W. Yu, and Andreas Wilting. GigaScience. 8(4): 1-17. 2019. DOI: 10.1093/gigascience/giz029 One-locus-several-primers: a strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies [LINK] Emmanuel Corse, Christelle Tougard, Gaït Archambaud-Suard, Jean-François Agnèse, Françoise D. Messu Mandeng, Charles F. Bilong Bilong, David Duneau, Lucie Zinger, Rémi Chappaz, Charles C.Y. Xu, Emese Meglécz, and Vincent Dubut. Ecology and Evolution. 9(8): 4603-4620. 2019. DOI: 10.1002/ece3.5063 Linking a mutation to survival in wild mice [LINK] Rowan D.H. Barrett, Stefan Laurent, Ricardo Mallarino, Susanne P. Pfeifer, Charles C.Y. Xu, Matthieu Foll, Kazumasa Wakamatsu, Jonathan Duke-Cohan, Jeffrey D. Jensen, and Hopi E. Hoekstra. Science. 363(6426): 499-504. 2019. DOI: 10.1126/science.aav3824 Keystone genes [LINK] Lotte H. Skovmand, Charles C.Y. Xu, Maria R. Servedio, Patrik Nosil, Rowan D.H. Barrett, and Andrew P. Hendry. Trends in Ecology and Evolution. 33(9): 689-700. 2018. DOI: 10.1016/j.tree.2018.07.002 Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: evidence from a known tropical mammal community [LINK] Torrey W. Rodgers, Charles C.Y. Xu, Jacalyn Giacalone, Karen M. Kapheim, Kristin Saltonstall, Marta Vargas, Douglas W. Yu, Panu Somervuo, Patrick A. Jansen, and William O. McMillan. Molecular Ecology Resources. 0(0): 1-13. 2017. DOI: 10.1111/1755-0998.12701 Quantifying uncertainty of taxonomic placement in DNA barcoding and metabarcoding [LINK] Panu Somervuo, Douglas W. Yu, Charles C.Y. Xu, Yinqiu Ji, Jenni Hultman, Helena Wirta, and Otso Ovaskainen. Methods in Ecology and Evolution. 8(4): 398-401. 2017. DOI: 10.1111/2041-210X.12721 Effect of tree logging on reproductive performance in Blue Tits (Cyanistes caeruleus) [LINK] Seyed M. Amininasab, Charles C.Y. Xu, Sjouke A. Kingma, and Jan Komdeur. Journal of Ornithology. 158(1): 339-344. 2017. DOI: 10.1007/s10336-016-1393-8 Spider web DNA: a new spin on noninvasive genetics of predator and prey [LINK] Charles C.Y. Xu, Ivy J. Yen, Dean Bowman, and Cameron R. Turner. PLOS ONE. 10.11. 2015. DOI: 10.1371/journal.pone.0142503 Particle size distribution and optimal capture of aqueous macrobial eDNA [LINK] Cameron R. Turner, Matthew A. Barnes, Charles C.Y. Xu, Stuart E. Jones, Christopher L. Jerde, and David M. Lodge. Methods in Ecology and Evolution. 5(7): 676-684. 2014. DOI: 10.1111/2041-210X.12206 The geographic distribution of Rhagoletis pomonella (Diptera: Tephritidae) in the western United States: introduced species or native population? [LINK] Glen R. Hood, Wee Yee, Robert B. Goughnour, Sheina B. Sim, Scott P. Egan, Tracy Arcella, Gilbert Saint-Jean, Thomas H.Q. Powell, Charles C.Y. Xu, and Jeffrey L. Feder. Annals of the Entomological Society of America. 106(1): 59-65. 2013. DOI: 10.1603/AN12074 |
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